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snvs and insertion/deletion polymorphisms called with pepper-margin-deepvariant v0.8  (Pacific Biosciences)
90
Pacific Biosciences snvs and insertion/deletion polymorphisms called with pepper-margin-deepvariant v0.8
Snvs And Insertion/Deletion Polymorphisms Called With Pepper Margin Deepvariant V0.8, supplied by Pacific Biosciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/pm38937606-151-13-23?v=Pacific+Biosciences
Average 90 stars, based on 1 article reviews
snvs and insertion/deletion polymorphisms called with pepper-margin-deepvariant v0.8 - by Bioz Stars, 2026-07
90/100 stars
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9p801, also called ttd-001 (586-aq-587 substituted with 586-pl-587 and ngavhly inserted after aav9 aa588)  (Voyager Therapeutics)
90
Voyager Therapeutics 9p801, also called ttd-001 (586-aq-587 substituted with 586-pl-587 and ngavhly inserted after aav9 aa588)
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
9p801, Also Called Ttd 001 (586 Aq 587 Substituted With 586 Pl 587 And Ngavhly Inserted After Aav9 Aa588), supplied by Voyager Therapeutics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/pmc10975205-587-10-66?v=Voyager+Therapeutics
Average 90 stars, based on 1 article reviews
9p801, also called ttd-001 (586-aq-587 substituted with 586-pl-587 and ngavhly inserted after aav9 aa588) - by Bioz Stars, 2026-07
90/100 stars
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insertion structural variant calling tool  (Illumina Inc)
90
Illumina Inc insertion structural variant calling tool
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
Insertion Structural Variant Calling Tool, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/bio_rxiv__2023__10__13__562297-77-11-13?v=Illumina+Inc
Average 90 stars, based on 1 article reviews
insertion structural variant calling tool - by Bioz Stars, 2026-07
90/100 stars
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gene insertion vector called pshuttle  (Addgene inc)
92
Addgene inc gene insertion vector called pshuttle
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
Gene Insertion Vector Called Pshuttle, supplied by Addgene inc, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/pmc09051992-113-10-16?v=Addgene+inc
Average 92 stars, based on 1 article reviews
gene insertion vector called pshuttle - by Bioz Stars, 2026-07
92/100 stars
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cysteine-rich 59-amino-acid insert between rck domains called strex variant  (STREX Inc)
90
STREX Inc cysteine-rich 59-amino-acid insert between rck domains called strex variant
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
Cysteine Rich 59 Amino Acid Insert Between Rck Domains Called Strex Variant, supplied by STREX Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/pmc08596180-178-3-10?v=STREX+Inc
Average 90 stars, based on 1 article reviews
cysteine-rich 59-amino-acid insert between rck domains called strex variant - by Bioz Stars, 2026-07
90/100 stars
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pet membrane inserts coated with hyaluronic acid-based hydrogel called healon 5  (Abbott Laboratories)
90
Abbott Laboratories pet membrane inserts coated with hyaluronic acid-based hydrogel called healon 5
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
Pet Membrane Inserts Coated With Hyaluronic Acid Based Hydrogel Called Healon 5, supplied by Abbott Laboratories, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/pm31734324-60-12-23?v=Abbott+Laboratories
Average 90 stars, based on 1 article reviews
pet membrane inserts coated with hyaluronic acid-based hydrogel called healon 5 - by Bioz Stars, 2026-07
90/100 stars
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insertion calls  (BioNano Genomics)
90
BioNano Genomics insertion calls
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
Insertion Calls, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/pm33127893-339-13-13?v=BioNano+Genomics
Average 90 stars, based on 1 article reviews
insertion calls - by Bioz Stars, 2026-07
90/100 stars
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tungsten carbide milling insert with 15 rake face angle, chamfer width (also called as t-land)  (Kennametal Inc)
90
Kennametal Inc tungsten carbide milling insert with 15 rake face angle, chamfer width (also called as t-land)
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
Tungsten Carbide Milling Insert With 15 Rake Face Angle, Chamfer Width (Also Called As T Land), supplied by Kennametal Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/10__1016_slash_j__cirpj__2020__06__004-61-13-0?v=Kennametal+Inc
Average 90 stars, based on 1 article reviews
tungsten carbide milling insert with 15 rake face angle, chamfer width (also called as t-land) - by Bioz Stars, 2026-07
90/100 stars
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deletion and insertion calls  (Illumina Inc)
90
Illumina Inc deletion and insertion calls
( A ) Ribbon diagram of the <t>AAV9</t> viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).
Deletion And Insertion Calls, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/insertion+calls/pmc06467913__41467_2018_8148_MOESM1_ESM-312-3-11?v=Illumina+Inc
Average 90 stars, based on 1 article reviews
deletion and insertion calls - by Bioz Stars, 2026-07
90/100 stars
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Image Search Results


( A ) Ribbon diagram of the AAV9 viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).

Journal: Viruses

Article Title: Natural Adeno-Associated Virus Serotypes and Engineered Adeno-Associated Virus Capsid Variants: Tropism Differences and Mechanistic Insights

doi: 10.3390/v16030442

Figure Lengend Snippet: ( A ) Ribbon diagram of the AAV9 viral protein monomer colored by chain and with labelled β-sheet strands, α helix, VRs, and C/N-terminus. VR location within protein chains: VR-I (blue), VR-II (teal), VR-III (dark blue), VR-IV (green), VR-V and VR-VI (yellow), VR-VII (dark yellow), VR-VIII (orange), and VR-IX (red). ( B ) Adeno-associated virus (AAV) capsid surface model illustrates the location of variable regions (VR)-IV, V, and VIII (left panel). Representation of the AAV9 capsid zoomed-in (right panels), showing VR-IV at AA452-460 (red) and VR-VIII at AA581-593 (green) from a monomer and VR-V at AA488-505 (blue) from the adjacent monomer of the three-fold axis. ( C ) Comparison of VP1 amino acid sequences from AAV serotypes 1, 2, 3, 4, 6, 7, 8, and 9. VRs are highlighted in red boxes. Multi-sequence alignment in ( C ) performed with Clustal Omega (available at: https://www.ebi.ac.uk/Tools/msa/clustalo/ ). Images in ( A , B ) constructed with PyMOL Molecular Graphics System Version 2.5.5, Schrodinger, LLC (Boston, MA, USA).

Article Snippet: These novel CNS variants include the following: 9P801, also called TTD-001 (586-AQ-587 substituted with 586-PL-587 and NGAVHLY inserted after AAV9 AA588) [ ], which was screened and characterized in cynomolgus macaque, mice, and human brain microvascular endothelial cells using the TRACER platform; VCAP-101 and VCAP-102 (peptide insertion into AAV9 VR-IV), screened and characterized in adult African green monkeys, cynomolgus macaques, marmoset, and C57BL/6 and BALB/c mice (Voyager Therapeutics, ASGCT 2023); CGN2, screened in mice using the TRADE platform and characterized in cynomolgus macaque (Capsigen, ASGCT 2023); bCap 1, characterized in NHP (Dyno Therapeutics, ASGCT 2023); and a GEN5 capsid variant from Capsida Biotherapeutics, screened in adult cynomolgus macaques (ASGCT 2023).

Techniques: Virus, Comparison, Sequencing, Construct

Primary receptors and secondary co-receptors of commonly used AAV serotypes.

Journal: Viruses

Article Title: Natural Adeno-Associated Virus Serotypes and Engineered Adeno-Associated Virus Capsid Variants: Tropism Differences and Mechanistic Insights

doi: 10.3390/v16030442

Figure Lengend Snippet: Primary receptors and secondary co-receptors of commonly used AAV serotypes.

Article Snippet: These novel CNS variants include the following: 9P801, also called TTD-001 (586-AQ-587 substituted with 586-PL-587 and NGAVHLY inserted after AAV9 AA588) [ ], which was screened and characterized in cynomolgus macaque, mice, and human brain microvascular endothelial cells using the TRACER platform; VCAP-101 and VCAP-102 (peptide insertion into AAV9 VR-IV), screened and characterized in adult African green monkeys, cynomolgus macaques, marmoset, and C57BL/6 and BALB/c mice (Voyager Therapeutics, ASGCT 2023); CGN2, screened in mice using the TRADE platform and characterized in cynomolgus macaque (Capsigen, ASGCT 2023); bCap 1, characterized in NHP (Dyno Therapeutics, ASGCT 2023); and a GEN5 capsid variant from Capsida Biotherapeutics, screened in adult cynomolgus macaques (ASGCT 2023).

Techniques: